Prof. BERAT DOĞAN

Publication Network

Articles 25

1. NMR-Based Metabolomics Profiling Reveals Dose-Dependent Cardiotoxic Effects of Favipiravir in Rats.

Erdoğan A., Mumcu A., Çevik Z. R., Özkan Ö. L., Doğan B.

Magnetic resonance in chemistry : MRC , vol.64, no.7, pp.629-640, 2026 (SCI-Expanded, Scopus)

2. Urinary Multiomics Signatures of Preterm Premature Rupture of Membranes: An Exploratory Analysis of Microbial and Metabolic Biomarkers.

Doğan B., Mumcu A., Arda Düz S., Otlu B., Karaer A., Tuncay G.

Journal of proteome research , vol.24, pp.6226-6237, 2025 (SCI-Expanded, Scopus)

3. GRWD1 Drives Melanoma Growth Through NF-κB Signaling Pathway

Türkmen D., Ozbey R., Ozdem B., Alan S., Cetin A. K., Baran F. B., et al.

Dermatology Practical and Conceptual , vol.15, no.4, 2025 (SCI-Expanded, Scopus)

4. Metabolomics approach using HR-MAS NMR spectroscopy for the assessment of metabolic profiles of uterine fibroids.

Düz S., Mumcu A., Doğan B., Sarıdoğan E., Tuncay G., Onat T., et al.

Analytical biochemistry , vol.704, pp.115885, 2025 (SCI-Expanded, Scopus)

5. CBMAP: Clustering-Based Manifold Approximation and Projection for Dimensionality Reduction

Doğan B.

IEEE ACCESS , vol.13, pp.145158-145167, 2025 (SCI-Expanded)

6. Multi-omics analysis of placental metabolomics and transcriptomics datasets reveals comprehensive insights into the pathophysiology of preeclampsia

Mumcu A., Sarıdoğan E., Arda Düz S., Tuncay G., Erdoğan A., Karaer K., et al.

JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS , vol.256, no.15 April 2025, pp.1-10, 2025 (SCI-Expanded, Scopus)

7. Investigation of metabolite profiles of kidney tissues in rats treated with favipiravir drug: An NMR-based metabolomics study.

Çevik Z. R., Erdoğan A., Mumcu A., Doğan B.

Journal of pharmaceutical and biomedical analysis , vol.255, pp.116640, 2024 (SCI-Expanded, Scopus)

8. scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies.

Baran Y., Doğan B.

Computers in biology and medicine , vol.155, pp.106634, 2023 (SCI-Expanded, Scopus)

9. Metabolomic analysis of endometrial cancer by high-resolution magic angle spinning NMR spectroscopy.

Arda Düz S., Mumcu A., Doğan B., Yılmaz E., İnci Çoşkun E., Sarıdogan E., et al.

Archives of gynecology and obstetrics , 2022 (SCI-Expanded, Scopus)

10. Metabolomics analysis of placental tissue obtained from patients with fetal growth restriction

KARAER A., MUMCU A., ARDA DÜZ S., TUNCAY G., DOĞAN B.

JOURNAL OF OBSTETRICS AND GYNAECOLOGY RESEARCH , vol.48, no.4, pp.920-929, 2022 (SCI-Expanded, Scopus)

11. The vaginal microbiota composition of women undergoing assisted reproduction: a prospective cohort study

Karaer A., Doğan B., Günal S., Tuncay G., Arda Düz S., Ünver T., et al.

BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY , vol.128, no.13, pp.2101-2109, 2021 (SCI-Expanded, Scopus)

12. Microarray analysis of cumulus cells in women with ovarian endometriosis undergoing intracytoplasmic sperm injection

KARAER A., TUNCAY G., DOĞAN B., Tecellioglu N., ÇİĞREMİŞ Y.

JOURNAL OF ENDOMETRIOSIS AND PELVIC PAIN DISORDERS , vol.12, no.2, pp.86-93, 2020 (ESCI, Scopus) Sustainable Development

13. Metabolomics analysis of seminal plasma in patients with idiopathic Oligoasthenoteratozoospermia using high-resolution NMR spectroscopy

Mumcu A., Karaer A., Dogan B., Tuncay G.

Andrology , vol.8, no.2, pp.450-456, 2020 (SCI-Expanded, Scopus)

14. High-resolution 1H-NMR spectroscopy indicates variations in metabolomics profile of follicular fluid from women with advanced maternal age

Dogan B., Karaer A., Tuncay G., Tecellioglu N., Mumcu A.

Journal of Assisted Reproduction and Genetics , vol.37, no.2, pp.321-330, 2020 (SCI-Expanded, Scopus) Sustainable Development

15. An alignment-free method for bulk comparison of protein sequences from different species

DOĞAN B.

BALKAN JOURNAL OF ELECTRİCAL AND COMPUTER ENGİNEERİNG , vol.7, no.4, pp.405-416, 2019 (TRDizin)

16. Metabolomics analysis of follicular fluid in women with ovarian endometriosis undergoing in vitro fertilization

KARAER A., TUNCAY G., MUMCU A., DOĞAN B.

SYSTEMS BIOLOGY IN REPRODUCTIVE MEDICINE , vol.65, no.1, pp.39-47, 2019 (SCI-Expanded, Scopus) Sustainable Development

17. Optimized spatial filters as a new method for mass spectrometry-based cancer diagnosis

DOĞAN B.

APPLIED SOFT COMPUTING , vol.48, pp.59-79, 2016 (SCI-Expanded, Scopus) Sustainable Development

18. A modified Vortex Search algorithm for numerical function optimization

DOĞAN B.

, International Journal of Artificial Intelligence & Applications , vol.7, no.3, pp.37-54, 2016 (Peer-Reviewed Journal)

19. Modified off-lattice AB Model for protein folding problem using the Vortex Search algorithm

DOĞAN B., ÖLMEZ T.

International Journal of Machine Learning and Computing , vol.5, no.4, pp.329-333, 2015 (Scopus)

20. A new metaheuristic for numerical function optimization: Vortex Search algorithm

Dogan B., Ölmez T.

INFORMATION SCIENCES , vol.293, pp.125-145, 2015 (SCI-Expanded, Scopus)

21. Vortex search algorithm for the analog active filter component selection problem

Dogan B., Ölmez T.

AEU-INTERNATIONAL JOURNAL OF ELECTRONICS AND COMMUNICATIONS , vol.69, no.9, pp.1243-1253, 2015 (SCI-Expanded, Scopus)

22. A novel state space representation for the solution of 2D-HP protein folding problem using reinforcement learning methods

Dogan B., Ölmez T.

APPLIED SOFT COMPUTING , vol.26, pp.213-223, 2015 (SCI-Expanded, Scopus)

23. Prostate Cancer Classification from Mass Spectrometry Data by Using Wavelet Analysis and Kernel Partial Least Squares Algorithm

TAŞKIN V., DOĞAN B., ÖLMEZ T.

International Journal of Bioscience, Biochemistry and Bioinformatics , vol.3, no.2, pp.98-102, 2013 (Peer-Reviewed Journal) Sustainable Development

24. A new ECG beat clustering method based on kernelized fuzzy c-means and hybrid ant colony optimization for continuous domains

Dogan B., Korurek M.

APPLIED SOFT COMPUTING , vol.12, no.11, pp.3442-3451, 2012 (SCI-Expanded, Scopus)

25. ECG beat classification using particle swarm optimization and radial basis function neural network

Koruerek M., Dogan B.

EXPERT SYSTEMS WITH APPLICATIONS , vol.37, no.12, pp.7563-7569, 2010 (SCI-Expanded, Scopus)

Papers Presented at Peer-Reviewed Scientific Conferences 12

1. GRWD1 PROTEİNİNİN MELANOMA TÜRÜ DERİ KANSERLERİNDEKİ ONKOJENİK ROLÜNÜN ARAŞTIRILMASI

Türkmen D., Özbey R., Özdem B., Kılınçlı Çetin A., Baran F. B., Doğan B., et al.

32. Uusal Dermatoloji Kongresi, Antalya, Turkey, 20 - 24 November 2024, pp.1-2, (Full Text)

2. GRWD1 Proteininin Melanoma Türü Deri Kanserlerindeki Onkojenik Rolünün Araştırılması

BARAN F. B., TÜRKMEN D., ÖZBEY R., ÖZDEM B., KILINÇLI ÇETİN A., DOĞAN B., et al.

32. Ulusal Dermatoloji Kongresi, Antalya, Turkey, 20 - 24 November 2024, (Full Text)

3. Multi-Omics Approach Based on the Analysis of Metabolomics and Transcriptomics Data for Understanding Placental Pathophysiology in Preeclampsia Patients

MUMCU A., SARIDOĞAN E., ARDA DÜZ S., TUNCAY G., ERDOĞAN A., KARAER K., et al.

Geleceğin Sağlık Teknolojileri - Genomiks Kongresi, İstanbul, Turkey, 8 - 09 December 2023, (Summary Text)

4. Decreased BMP-15 and BDNF mRNA expression levels in cumulus granulosa cells of women with ovarian endometriosis

KARAER A., TUNCAY G., DOĞAN B., TECELLİOĞLU N., ÇİĞREMİŞ Y.

Expert Meeting In Personalized Reproductive Medicine, 11 - 14 April 2019, (Summary Text) Sustainable Development

5. Protein-RNA Interaction Prediction Using Graphical Representation of Biological Sequences

DOĞAN B.

27th Signal Processing and Communications Applications Conference (SIU), Sivas, Turkey, 24 - 26 April 2019, (Full Text)

6. Metabolomics analysis of follicular fluid in women with ovarian endometriosis undergoing in vitro fertilization

Karaer A., Tuncay G., Mumcu A., Dogan B.

33rd Annual Meeting of the European-Society-of-Human-Reproduction-and-Embryology (ESHRE), Geneva, Switzerland, 2 - 05 July 2017, vol.32, pp.255, (Summary Text) Sustainable Development

7. Segmentation of Brain MRI Images By Using Type-II Fuzzy Clustering Algorithm

Toker I., Dogan B., Pinar S. K.

23nd Signal Processing and Communications Applications Conference (SIU), Malatya, Turkey, 16 - 19 May 2015, pp.1909-1912, (Full Text)

8. Analog Filter Group Delay Optimization Using the Vortex Search Algorithm

Dogan B., Yuksel A.

23nd Signal Processing and Communications Applications Conference (SIU), Malatya, Turkey, 16 - 19 May 2015, pp.288-291, (Full Text)

9. Fuzzy Clustering of ECG Beats Using a New Metaheuristic Approach

Dogan B., Ölmez T.

2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO), Granada, Nicaragua, 7 - 09 April 2014, pp.54-65, (Full Text)

10. ECG beat clustering using fuzzy c-means algorithm and particle swarm optimization EKG vurularinin bulanik c-ortalamalar algori̇tmasi ve parçacik sürü opti̇mi̇zasyonu yardimiyla öbekleşti̇ ri̇lmesi̇

Doǧan B., Korürek M.

2012 20th Signal Processing and Communications Applications Conference, SIU 2012, Fethiye, Mugla, Turkey, 18 - 20 April 2012, (Full Text)

11. ECG beat classification using ant colony optimization for continuous domains EKG vurularinin sürekli zaman karinca koloni optimizasyonu yardimiyla siniflandirilmasi

Doǧan B., Korürek M.

2010 7th National Conference on Electrical, Electronics and Computer Engineering, ELECO 2010, Bursa, Turkey, 2 - 05 December 2010, pp.497-501, (Full Text)