Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies.

Baran Y., Doğan B.
Computers in biology and medicine , vol.155, pp.106634, 2023 (SCI-Expanded) identifier identifier

Metabolomic analysis of endometrial cancer by high-resolution magic angle spinning NMR spectroscopy.

Arda Düz S., Mumcu A., Doğan B., Yılmaz E., İnci Çoşkun E., Sarıdogan E., et al.
Archives of gynecology and obstetrics , 2022 (SCI-Expanded) identifier identifier

Metabolomics analysis of placental tissue obtained from patients with fetal growth restriction

KARAER A., MUMCU A., ARDA DÜZ S., TUNCAY G., DOĞAN B.
JOURNAL OF OBSTETRICS AND GYNAECOLOGY RESEARCH , vol.48, no.4, pp.920-929, 2022 (SCI-Expanded) identifier identifier

The vaginal microbiota composition of women undergoing assisted reproduction: a prospective cohort study

Karaer A., Doğan B., Günal S., Tuncay G., Arda Düz S., Ünver T., et al.
BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY , vol.128, no.13, pp.2101-2109, 2021 (SCI-Expanded) identifier identifier

Metabolomics analysis of seminal plasma in patients with idiopathic Oligoasthenoteratozoospermia using high-resolution NMR spectroscopy

Mumcu A., Karaer A., Dogan B., Tuncay G.
Andrology , vol.8, no.2, pp.450-456, 2020 (SCI-Expanded) identifier identifier identifier

High-resolution 1H-NMR spectroscopy indicates variations in metabolomics profile of follicular fluid from women with advanced maternal age

Dogan B., Karaer A., Tuncay G., Tecellioglu N., Mumcu A.
Journal of Assisted Reproduction and Genetics , vol.37, no.2, pp.321-330, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Metabolomics analysis of follicular fluid in women with ovarian endometriosis undergoing in vitro fertilization

KARAER A., TUNCAY G., MUMCU A., DOĞAN B.
SYSTEMS BIOLOGY IN REPRODUCTIVE MEDICINE , vol.65, no.1, pp.39-47, 2019 (SCI-Expanded) Sustainable Development identifier identifier identifier

Optimized spatial filters as a new method for mass spectrometry-based cancer diagnosis

DOĞAN B.
APPLIED SOFT COMPUTING , vol.48, pp.59-79, 2016 (SCI-Expanded) Sustainable Development identifier identifier

A new metaheuristic for numerical function optimization: Vortex Search algorithm

Dogan B., Ölmez T.
INFORMATION SCIENCES , vol.293, pp.125-145, 2015 (SCI-Expanded) identifier identifier

Vortex search algorithm for the analog active filter component selection problem

Dogan B., Ölmez T.
AEU-INTERNATIONAL JOURNAL OF ELECTRONICS AND COMMUNICATIONS , vol.69, no.9, pp.1243-1253, 2015 (SCI-Expanded) identifier identifier

A novel state space representation for the solution of 2D-HP protein folding problem using reinforcement learning methods

Dogan B., Ölmez T.
APPLIED SOFT COMPUTING , vol.26, pp.213-223, 2015 (SCI-Expanded) identifier identifier

A new ECG beat clustering method based on kernelized fuzzy c-means and hybrid ant colony optimization for continuous domains

Dogan B., Korurek M.
APPLIED SOFT COMPUTING , vol.12, no.11, pp.3442-3451, 2012 (SCI-Expanded) identifier identifier

ECG beat classification using particle swarm optimization and radial basis function neural network

Koruerek M., Dogan B.
EXPERT SYSTEMS WITH APPLICATIONS , vol.37, no.12, pp.7563-7569, 2010 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

Microarray analysis of cumulus cells in women with ovarian endometriosis undergoing intracytoplasmic sperm injection

KARAER A., TUNCAY G., DOĞAN B., Tecellioglu N., ÇİĞREMİŞ Y.
JOURNAL OF ENDOMETRIOSIS AND PELVIC PAIN DISORDERS , vol.12, no.2, pp.86-93, 2020 (ESCI) Sustainable Development identifier identifier

An alignment-free method for bulk comparison of protein sequences from different species

DOĞAN B.
BALKAN JOURNAL OF ELECTRİCAL AND COMPUTER ENGİNEERİNG , vol.7, no.4, pp.405-416, 2019 (Peer-Reviewed Journal)

A modified Vortex Search algorithm for numerical function optimization

DOĞAN B.
, International Journal of Artificial Intelligence & Applications , vol.7, no.3, pp.37-54, 2016 (Peer-Reviewed Journal)

Modified off-lattice AB Model for protein folding problem using the Vortex Search algorithm

DOĞAN B., ÖLMEZ T.
International Journal of Machine Learning and Computing , vol.5, no.4, pp.329-333, 2015 (Scopus)

Prostate Cancer Classification from Mass Spectrometry Data by Using Wavelet Analysis and Kernel Partial Least Squares Algorithm

TAŞKIN V., DOĞAN B., ÖLMEZ T.
International Journal of Bioscience, Biochemistry and Bioinformatics , vol.3, no.2, pp.98-102, 2013 (Peer-Reviewed Journal) Sustainable Development

Refereed Congress / Symposium Publications in Proceedings

Multi-Omics Approach Based on the Analysis of Metabolomics and Transcriptomics Data for Understanding Placental Pathophysiology in Preeclampsia Patients

MUMCU A., SARIDOĞAN E., ARDA DÜZ S., TUNCAY G., ERDOĞAN A., KARAER K., et al.
Geleceğin Sağlık Teknolojileri - Genomiks Kongresi, İstanbul, Turkey, 8 - 09 December 2023

Decreased BMP-15 and BDNF mRNA expression levels in cumulus granulosa cells of women with ovarian endometriosis

KARAER A., TUNCAY G., DOĞAN B., TECELLİOĞLU N., ÇİĞREMİŞ Y.
Expert Meeting In Personalized Reproductive Medicine, 11 - 14 April 2019 Sustainable Development

Protein-RNA Interaction Prediction Using Graphical Representation of Biological Sequences

DOĞAN B.
27th Signal Processing and Communications Applications Conference (SIU), Sivas, Turkey, 24 - 26 April 2019 identifier identifier

Metabolomics analysis of follicular fluid in women with ovarian endometriosis undergoing in vitro fertilization

Karaer A., Tuncay G., Mumcu A., Dogan B.
33rd Annual Meeting of the European-Society-of-Human-Reproduction-and-Embryology (ESHRE), Geneva, Switzerland, 2 - 05 July 2017, vol.32, pp.255 Sustainable Development identifier

Segmentation of Brain MRI Images By Using Type-II Fuzzy Clustering Algorithm

Toker I., Dogan B., Pinar S. K.
23nd Signal Processing and Communications Applications Conference (SIU), Malatya, Turkey, 16 - 19 May 2015, pp.1909-1912 identifier identifier

Analog Filter Group Delay Optimization Using the Vortex Search Algorithm

Dogan B., Yuksel A.
23nd Signal Processing and Communications Applications Conference (SIU), Malatya, Turkey, 16 - 19 May 2015, pp.288-291 identifier identifier

Fuzzy Clustering of ECG Beats Using a New Metaheuristic Approach

Dogan B., Ölmez T.
2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO), Granada, Nicaragua, 7 - 09 April 2014, pp.54-65 identifier

ECG beat clustering using fuzzy c-means algorithm and particle swarm optimization EKG vurularinin bulanik c-ortalamalar algori̇tmasi ve parçacik sürü opti̇mi̇zasyonu yardimiyla öbekleşti̇ ri̇lmesi̇

Doǧan B., Korürek M.
2012 20th Signal Processing and Communications Applications Conference, SIU 2012, Fethiye, Mugla, Turkey, 18 - 20 April 2012 identifier

ECG beat classification using ant colony optimization for continuous domains EKG vurularinin sürekli zaman karinca koloni optimizasyonu yardimiyla siniflandirilmasi

Doǧan B., Korürek M.
2010 7th National Conference on Electrical, Electronics and Computer Engineering, ELECO 2010, Bursa, Turkey, 2 - 05 December 2010, pp.497-501 identifier

Performance Evaluation of Radial Basis Function Neural Network on ECG Beat Classification

Dogan B., Korurek M.
14th National Biomedical Engineering Meeting, İzmir, Turkey, 20 - 22 May 2009, pp.147-150 identifier identifier

Books & Book Chapters

Computational Methods for Analysis of the DNA-Binding Preferences of Cys2His2 Zinc-Finger Proteins

Doğan B., Najafabadı H. S.
in: Zinc Finger Proteins Methods and Protocols, Jia Liu, Editor, Springer, London/Berlin , New York, pp.15-28, 2018

Metrics

Publication

31

Citation (WoS)

529

H-Index (WoS)

8

Citation (Scopus)

642

H-Index (Scopus)

8

Project

17
UN Sustainable Development Goals